PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0706
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 449aa    MW: 51609.3 Da    PI: 6.2875
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0706genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.72.1e-25121217185
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +Wt+++v++Li+a+++++e+   g+           +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d +
  Gh_D02G0706 121 KWTDKMVRLLITAVSYIGEDAAGGCgggmrrkfaviQKKGKWKSVSKVMAERSYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDVI 217
                  7*********************998899999999************************************************569999888887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.3E-23119244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEGNLSQGGM IPGGGSFGGL DLQGSMRVHN HAQNPHSIHQ HHHPNPRQGA SLHASIHEDF  60
PLKMGNIQNS DQIISLMDYN KGERGKSSVS DEDEPSFTEE GIDGHNDGSK GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED AAGGCGGGMR RKFAVIQKKG KWKSVSKVMA ERSYHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPQLQ RSLQLAFRIK DDQEKDDAKR HRHDDNDDDD DDDDDMETDD  300
HDDFEENHAS HGDDRGIYRV LGGSAKRSRQ VQVHEDACFH NSSNSQDCNK NSFPYPPPAQ  360
ADINQAPPEN PRAAWLQKQW IESCSLQLEE QKLQIQVEML ELEKQRFKWQ RFSKKRDREL  420
EKMRMENERM KLENERMALE LKRKELDAD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.216940.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482417.10.0PREDICTED: uncharacterized protein LOC105797036
TrEMBLA0A0D2RHC70.0A0A0D2RHC7_G
STRINGPOPTR_0002s06930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-171sequence-specific DNA binding transcription factors